Author details:
1. Roux, F.; Sproston, E.; Rotariu, O.; MacRae, M.; Sheppard, S.K.; Bessell, P.; Smith-Palmer, A.; Cowden, J.; Maiden, M.C.J.; Forbes, K.J.; et al. Elucidating the aetiology of human Campylobacter coli infections. PLoS ONE 2013, 8, e64504. [CrossRef]
2. Awad, W.A.; Hess, C.; Hess, M. Re-Thinking the chicken–Campylobacter jejuni interaction: A review. Avian Pathol. 2018, 47, 352–363. [CrossRef]
3. Connerton, P.L.; Richards, P.J.; Lafontaine, G.M.; O’kane, P.M.; Ghaffar, N.; Cummings, N.J.; Smith, D.L.; Fish, N.M.; Connerton, I.F. The effect of the timing of exposure to Campylobacter jejuni 6 days vs. 20. Microbiome 2018, 6, 1–17. [CrossRef]
4. Nyati, K.K.; Prasad, K.N.; Agrawal, V.; Husain, N. Matrix metalloproteinases-2 and -9 in Campylobacter jejuni-induced paralytic neuropathy resembling Guillain-Barré syndrome in chickens. Microb. Pathog. 2017, 111, 395–401. [CrossRef]
5. Han, Z.; Willer, T.; Pielsticker, C.; Gerzova, L.; Rychlik, I.; Rautenschlein, S. Differences in host breed and diet influence colonization by Campylobacter jejuni and induction of local immune responses in chicken. Gut Pathog. 2016, 8, 1–14. [CrossRef]
6. Li, X.; Swaggerty, C.L.; Kogut, M.H.; Chiang, H.I.; Wang, Y.; Genovese, K.J.; He, H.; Zhou, H. Gene expression profiling of the local cecal response of genetic chicken lines that differ in their susceptibility to Campylobacter jejuni colonization. PLoS ONE 2010, 5, e11827. [CrossRef]
7. Humphrey, S.; Chaloner, G.; Kemmett, K.; Davidson, N.; Williams, N.; Kipar, A.; Humphrey, T.; Wigley, P. Campylobacter jejuni is not merely a commensal in commercial broiler chickens and affects bird welfare. MBio 2014, 5, 1–7. [CrossRef] [PubMed]
8. Karaffová, V.; Revajová, V.; Košˇcová, J.; Gancarˇcíková, S.; Nemcová, R.; Ševˇcíková, Z.; Herich, R.; Levkut, M., Sr. Local intestinal immune response including NLRP3 inflammasome in broiler chicken infected with Campylobacter jejuni after administration of Lactobacillus reuteri B1/1. Food Agric. Immunol. 2020, 31, 937–949. [CrossRef]
9. Karaffová, V.; Marcinková, E.; Bobíková, K.; Herich, R.; Revajová, V.; Stašová, D.; Kavul’ová, A.; Levkutová, M.; Levkut, M.; Lauková, A.; et al. TLR4 and TLR21 expression, MIF, IFN-β, MD-2, CD14 activation, and SIgA production in chickens administered with EFAL41 strain challenged with Campylobacter jejuni. Folia Microbiol. 2017, 62, 89–97.
10. Laukova, A.; Pogany Simonova, M.; Kubasova, I.; Gancarcikova, S.; Placha, I.; Scerbova, J.; Revajova, V.; Herich, R.; Levkut, M.; Strompfova, V. Pilot experiment in chickens challenged with Campylobacter jejuni CCM6191 administered enterocin M-producing probiotic strain Enterococcus faecium CCM8558 to check its protective effect. Czech J. Anim. Sci. 2017, 62, 491–500. [CrossRef]
11. Mortada, M.; Cosby, D.E.; Shanmugasundaram, R.; Selvaraj, R.K. In vivo and in vitro assessment of commercial probiotic and organic acid feed additives in broilers challenged with Campylobacter coli. J. Appl. Poult. Res. 2020, 29, 435–446. [CrossRef]
12. Elhadidy, M.; Miller, W.G.; Arguello, H.; Álvarez-Ordóñez, A.; Duarte, A.; Dierick, K.; Botteldoorn, N. Genetic basis and clonal population structure of antibiotic resistance in Campylobacter jejuni isolated from broiler carcasses in Belgium. Front. Microbiol. 2018, 9, 1–9. [CrossRef] [PubMed]
13. Mäesaar, M.; Meremäe, K.; Ivanova, M.; Roasto, M. Antimicrobial resistance and multilocus sequence types of Campylobacter jejuni isolated from Baltic broiler chicken meat and Estonian human patients. Poult. Sci. 2018, 97, 3645–3651. [CrossRef] [PubMed]
14. Simon, K.; Verwoolde, M.B.; Zhang, J.; Smidt, H.; De Vries Reilingh, G.; Kemp, B.; Lammers, A. Long-term effects of early life microbiota disturbance on adaptive immunity in laying hens. Poult. Sci. 2016, 95, 1543–1554. [CrossRef] [PubMed]
15. Schokker, D.; Jansman, A.J.M.; Veninga, G.; de Bruin, N.; Vastenhouw, S.A.; de Bree, F.M.; Bossers, A.; Rebel, J.M.J.; Smits, M.A. Perturbation of microbiota in one-day old broiler chickens with antibiotic for 24 hours negatively affects intestinal immune development. BMC Genom. 2017, 18, 1–14. [CrossRef] [PubMed]
16. Rubio, L.A. Possibilities of early life programming in broiler chickens via intestinal microbiota modulation. Poult. Sci. 2019, 98, 695–706. [CrossRef]
17. Baldwin, S.; Hughes, R.J.; Van, T.T.H.; Moore, R.J.; Stanley, D. At-hatch administration of probiotic to chickens can introduce beneficial changes in gut microbiota. PLoS ONE 2018, 13, e0194825. [CrossRef]
18. Huang, L.; Luo, L.; Zhang, Y.; Wang, Z.; Xia, Z. Effects of the dietary probiotic, Enterococcus Faecium NCIMB11181, on the intestinal barrier and system immune status in Escherichia Coli O78-challenged broiler chickens. Probiotics Antimicrob. Proteins 2019, 11, 946–956. [CrossRef]
19. Saint-Cyr, M.J.; Haddad, N.; Taminiau, B.; Poezevara, T.; Quesne, S.; Amelot, M.; Daube, G.; Chemaly, M.; Dousset, X.; Guyard-Nicodème, M. Use of the potential probiotic strain Lactobacillus salivarius SMXD51 to control Campylobacter jejuni in broilers. Int. J. Food Microbiol. 2017, 247, 9–17. [CrossRef]
20. Šefcová, M.; Larrea-Álvarez, M.; Larrea-Álvarez, C.; Karaffová, V.; Revajová, V.; Gancarˇcíková, S.; Ševˇcíková, Z.; Herich, R. Lactobacillus fermentum Administration Modulates Cytokine Expression and Lymphocyte Subpopulation Levels in Broiler Chickens Challenged with Campylobacter coli. Foodborne Pathog. Dis. 2020, 17, 485–493. [CrossRef]
21. Kelley, N.; Jeltema, D.; Duan, Y.; He, Y. The NLRP3 inflammasome: An overview of mechanisms of activation and regulation. Int. J. Mol. Sci. 2019, 20, 3328. [CrossRef] [PubMed]
22. Stašová, D.; Husáková, E.; Bobíková, K.; Karaffová, V.; Levkutová, M.; Levkut, M. Expression of cytokines in chicken peripheral blood mononuclear cells after stimulation by probiotic bacteria and Campylobacter jejuni in vitro. Food Agric. Immunol. 2015, 26, 813–820. [CrossRef]
23. Lehri, B.; Seddon, A.M.; Karlyshev, A.V. Lactobacillus fermentum 3872 as a potential tool for combatting Campylobacter jejuni infections. Virulence 2017, 8, 1753–1760. [CrossRef] [PubMed]
24. Cobb-Vantress. Broiler Management Guide. Available online: https://cobb-vantress.com (accessed on 23 August 2020).
25. Šefcová, M.; Levkut, M.; Bobíková, K.; Karaffová, V.; Revajová, V.; Cingel’ová Marušˇcáková, I.; Levkutová, M.; Ševˇcíková, Z.; Herich, R.; Levkut, M. Cytokine response after stimulation of culture cells by zinc and probiotic strain. In Vitro Cell. Dev. Biol. Anim. 2019, 55, 830–837. [CrossRef] [PubMed]
26. Crhanova, M.; Hradecka, H.; Faldynova, M.; Matulova, M.; Havlickova, H.; Sisak, F.; Rychlik, I. Immune response of chicken gut to natural colonization by gut microflora and to Salmonella enterica serovar Enteritidis infection. Infect. Immun. 2011, 79, 2755–2763. [CrossRef]
27. Kolesarova, M.; Spisakova, V.; Matulova, M.; Crhanova, M.; Sisak, F.; Rychlik, I. Characterisation of basal expression of selected cytokines in the liver, spleen, and respiratory, reproductive and intestinal tract of hens. Vet. Med. 2011, 56, 325–332. [CrossRef]
28. De Boever, S.; Vangestel, C.; De Backer, P.; Croubels, S.; Sys, S.U. Identification and validation of housekeeping genes as internal control for gene expression in an intravenous LPS inflammation model in chickens. Vet. Immunol. Immunopathol. 2008, 122, 312–317. [CrossRef]
29. Bhat, I.A.; Naykoo, N.A.; Qasim, I.; Ganie, F.A.; Yousuf, Q.; Bhat, B.A.; Rasool, R.; Aziz, S.A.; Shah, Z.A. Association of interleukin 1 Beta (IL-1β) polymorphism with mRNA expression and risk of non small cell lung cancer. Meta Gene 2014, 2, 123–133. [CrossRef]
30. Konjar, Š.; Ferreira, C.; Blankenhaus, B.; Veldhoen, M. Intestinal barrier interactions with specialized CD8 T cells. Front. Immunol. 2017, 8, 1–15. [CrossRef]
31. Mensikova, M.; Stepanova, H.; Faldyna, M. Interleukin-17 in veterinary animal species and its role in various diseases: A review. Cytokine 2013, 64, 11–17. [CrossRef]
32. He, H.; Genovese, K.J.; Kogut, M.H. Modulation of chicken macrophage effector function by TH1/TH2 cytokines. Cytokine 2011, 53, 363–369. [CrossRef] [PubMed]
33. Oh, S.; Lillehoj, H.S.; Lee, Y.; Bravo, D.; Lillehoj, E.P. Dietary antibiotic growth promoters down-regulate intestinal inflammatory cytokine expression in chickens challenged with LPS or co-infected with Eimeria maxima and Clostridium perfringens. Front. Vet. Sci. 2019, 6, 1–13. [CrossRef] [PubMed]
34. Sureshkumar, S.; Jung, S.K.; Kim, D.; Oh, K.B.; Yang, H.; Lee, H.C.; Jin, J.Y.; Sun, L.H.; Lee, S.; Byun, S.J. Oral administration of Lactobacillus reuteri expressing a 3D8 single-chain variable fragment (ScFv) enhances chicken growth and conserves immune homeostasis. 3 Biotech 2019, 9, 1–7. [CrossRef] [PubMed]
35. Bron, P.A.; Van Baarlen, P.; Kleerebezem, M. Emerging molecular insights into the interaction between probiotics and the host intestinal mucosa. Nat. Rev. Microbiol. 2012, 10, 66–78. [CrossRef]
36. Brisbin, J.T.; Gong, J.; Parvizi, P.; Sharif, S. Effects of lactobacilli on cytokine expression by chicken spleen and cecal tonsil cells. Clin. Vaccine Immunol. 2010, 17, 1337–1343. [CrossRef
37. Barjesteh, N.; Hodgins, D.C.; St. Paul, M.; Quinteiro-Filho, W.M.; DePass, C.; Monteiro, M.A.; Sharif, S. Induction of chicken cytokine responses in vivo and in vitro by lipooligosaccharide of Campylobacter jejuni HS:10. Vet. Microbiol. 2013, 164, 122–130. [CrossRef]
38. Sanad, Y.M.; Kwoni, J.; Kashoma, I.; Zhang, X.; Kassem, I.I.; Saif, Y.M.; Rajashekara, G. Insights into potential pathogenesis mechanisms associated with Campylobacter jejuni-induced abortion in ewes. BMC Vet. Res. 2014, 10, 1–13. [CrossRef]
39. Shaughnessy, R.G.; Meade, K.G.; McGivney, A.B.; Allan, B.; O’Farrelly, C. Global gene expression analysis of chicken caecal response to Campylobacter jejuni. Vet. Immunol. Immunopathol. 2011, 142, 64–71. [CrossRef]
40. Dunislawska, A.; Slawinska, A.; Stadnicka, K.; Bednarczyk, M.; Gulewicz, P.; Jozefiak, D.; Siwek, M. Synbiotics for broiler chickens—In vitro design and evaluation of the influence on host and selected microbiota populations following in ovo delivery. PLoS ONE 2017, 12, e0168587. [CrossRef]
41. Zhang, L.; Liu, R.; Song, M.; Hu, Y.; Pan, B.; Cai, J.; Wang, M. Eimeria tenella: Interleukin 17 contributes to host immunopathology in the gut during experimental infection. Exp. Parasitol. 2013, 133, 121–130. [CrossRef]
42. Fonseca, B.B.; Fernandez, H.; Rossi, D.A. (Eds.) Campylobacter spp. and Related Organisms in Poultry; Springer: Cham, Switzerland, 2016; pp. 1–206.
43. Smith, C.K.; Abuoun, M.; Cawthraw, S.A.; Humphrey, T.J.; Rothwell, L.; Kaiser, P.; Barrow, P.A.; Jones, M.A. Campylobacter colonization of the chicken induces a proinflammatory response in mucosal tissues. FEMS Immunol. Med. Microbiol. 2008, 54, 114–121. [CrossRef] [PubMed]
44. Hermans, D.; Pasmans, F.; Heyndrickx, M.; Van Immerseel, F.; Martel, A.; Van Deun, K.; Haesebrouck, F. A Tolerogenic Mucosal Immune Response Leads to Persistent Campylobacter Jejuni Colonization in the Chicken Gut. Crit. Rev. Microbiol. 2012, 38, 17–29. [CrossRef] [PubMed]