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Mycobacterium bovis in Panama

Published: June 29, 2015
By: Fermín Acosta, Ekatherina Chernyaeva, Libardo Mendoza, Dilcia Sambrano, Ricardo Correa, Mikhail Rotkevich, Miroslava Tarté, Humberto Hernández, Bredio Velazco, Cecilia de Escobar, Jacobus H. de Waard, Amador Goodridge
Zoonotic tuberculosis (TB) is a chronic infectious disease of humans caused by transmission of Mycobacterium bovis from cattle (1). M. bovis infection in humans occurs after direct contact with infected cattle, ingestion of unpasteurized dairy products or raw or undercooked meat, or (rarely) person-to-person transmission (2). Despite the low incidence of zoonotic tuberculosis in the Americas, accumulating evidence confirms that death rates from M. bovis pulmonary infection in specific groups and settings, including in the United States and Mexico, are substantial (3,4). The risk for death is twice as high for children and persons with HIV co-infection and extrapulmonary TB than for HIV-negative persons with TB (3). M. bovis infection in cattle (bovine TB) has a major effect on meat and live animal export trade and dairy industry development and expansion (1). Thus, bovine TB eradication plans across the Americas are based on the elimination of any cattle with a positive tuberculin skin test (TST) result (5).
The most recently reported bovine TB outbreak in Panama occurred in 1997 in the western province of Bocas del Toro. The origin of this outbreak remains unclear. Since 2008 (after the slaughter of ≈7,000 cattle during the 1997 outbreak), Panama has not reported any bovine TB cases to the World Organisation for Animal Health (OIE) (Figure 1) (6). However, Panama has not received bovine TB-free accreditation. OIE data show that clinical bovine TB was continually reported from Colombia and Costa Rica during the same period (6).
In August 2013, despite active surveillance at country borders and in-country animal health controls, a new bovine TB outbreak in Panama was reported to OIE (6). Neither the neighboring countries of Colombia and Costa Rica nor Panama have reported zoonotic tuberculosis to OIE in the past 20 years (4,7). Among these countries, only Costa Rica does not test M. tuberculosis complex isolates to identify M. bovis. In contrast, Guatemala continually reports cases of zoonotic TB (6). Yet, the genetic biodiversity of M. bovis in Central America remains unexplored. Comparisons of mycobacterial interspersed repetitive unit–variable-number tandem-repeat (MIRU-VNTR) and single-nucleotide polymorphism (SNP) analyses based on whole-genome sequencing have proven to be helpful for identifying TB outbreaks elsewhere (8,9). We characterized and genotyped M. bovis isolates that reemerged in Panama during the 2013 outbreak of bovine TB.
The Study
In March 2013, as part of the Panamanian bovine TB control program, TSTs were administered to a dairy herd of 1,680 Jersey cows in Coclé Province, Panama. Animals with TST indurations >4 mm in diameter were considered positive. From animals with positive TST results, blood samples were collected for confirmation with an interferon-gamma release assay (BOVIGAM; Prionics, La Vista, NE, USA). Bovine TB was confirmed for 9 animals, 1 of which died naturally and 8 of which were sent to slaughter for postmortem examination and collection of samples for M. bovis culture. Epidemiologic investigation revealed that within the past 2 years, all 9 animals had been imported from Guatemala and Costa Rica according to controlled and legal commercial trade protocols. Visible lesions were found on all 8 slaughtered animals. Samples were obtained and sent for culture at the Laboratorio de Diagnóstico e Investigación Veterinaria de Salud Animal del Ministerio de Desarrollo Agropecuario.
Mycobacteria were isolated from 7 animals. Bacterial genomic DNA was extracted, and PCR identified the isolates as M. bovis (10). DNA from the M. bovis isolates was genotyped by 24-loci MIRU-VNTR (11). Whole-genome sequencing was performed by using the Illumina MiSeq platform (12), and sequencing reads were aligned on reference genome by using the bowtie2 program (http:// bowtie-bio.sourceforge.net/bowtie2/index.shtml) and for further SNP calling and variant cell format file processing by using a combination of SAMtools (http://samtools.sourceforge.net) and VCFtools (http://vcftools.source¬forge.net). M. bovis genome sequence NC_002945.3 was used as a reference for SNP/indel detection. Sequencing data for the M. bovis sequenced genomes were deposited in the National Center for Biotechnology Information Sequence Read Archive (accession no. PRJNA267480). SNP analysis revealed high homology among the 7 M. bovis isolates. However, the isolates were not directly related to 2 M. bovis isolates available from the 1997 bovine TB outbreak in Bocas del Toro (Figure 2).
Figure 1. Bovine tuberculosis (TB) in Panama, 1999–2013. Data from the World Organisation for Animal Health (http://www.oie.int/ animal-health-in-the-world/the-world-animal-health-informationsystem/the-oie-data-system/).
Mycobacterium bovis in Panama - Image 1
Figure 2. Phylogenic placement of the Mycobacterium bovis isolates. The M. bovis AF2122/97 sequence was used as a reference for single-nucleotide polymorphism analysis (GenBank accession no. NC_002945.3).The tree was derived from an unweighted pair-grouping method analysis algorithm by using DNA fragment sequence analysis. Numbers on branches represent bootstrap percentages from 500 replicates. M. canettii was used as the outgroup. Evolutionary analyses were performed by using MEGA6 software (http://www.megasoftware. net). Symbols indicate M. bovis isolates with identical genotypes according to mycobacterial interspersed repetitive units–variable number of tandem repeats. Scale bar indicates mean distances between strains according to base substitutions (%). CR, Costa Rica; GUA, Guatemala, PTY, Coclé, Panama.
Mycobacterium bovis in Panama - Image 2
Among the 7 isolates, a least four 24-loci MIRUVNTR M. bovis genotypes were identified, including 5 distinct loci sequences (Table, http://wwwnc.cdc.gov/EID/ article/21/6/14-1821-T1.htm). These 4 distinct genotypes suggest that bovine TB may have been introduced by at least 4 infected animals. The M. bovis strains obtained from animals imported from Guatemala were clustered according to MIRU-VNTR genotypes (Table). Similarly, MIRUVNTR genotypes for M. bovis isolates obtained from 3 animals imported from Costa Rica were more closely related. The 2 M. bovis isolates from the 1997 Bocas del Toro outbreak shared the same MIRU-VNTR genotypes with those from the recent outbreak. The molecular clock speed for this genotyping tool may account for the lack of differentiation in this last comparison, but we cannot rule out endemic spread of the same strain in this herd.
SNP analysis revealed high genetic similarity among all 7 M. bovis isolates from the 2013 bovine TB outbreak. In contrast, we found no direct relation between M. bovis isolates from the 2013 and 1997 outbreaks. Because all 7 isolates were grouped in 2 branches, it is possible that they were derived from a common ancestor in Central America. A comparison of the SNPs from the 7 M. bovis isolates from the 2013 outbreak with 2 M. bovis isolates from the 1997 Bocas del Toro outbreak showed no close relationships. Adjacent countries have often reported M. bovis strains with highly similar genotypes, but geographically distant countries have not (13).
We hypothesize that similar genotypes are being distributed in Central America because of augmented commercial trade between neighboring countries. Coincidentally, since January 2013, importation of cattle from Nicaragua, the United States, and Costa Rica into Panama for dairy and meat production has increased by ≈300%. Unfortunately, whole-genome sequencing data for M. bovis isolates from Central America are not available for validation of this hypothesis. Determination of the genetic structure of all M. bovis strains circulating in Central America will require further multicenter studies.
The diagnosis of bovine TB in Panama requires urgent attention. Accumulated genetic changes in M. bovis isolates from 2 outbreaks occurred 15 years apart (8). Currently in Latin America, use of the TST remains the preferred method of identifying animals with bovine TB, despite its sensitivity range of 68% to 95% (14,15). In addition, several factors can lead to false-positive and false-negative TST results (e.g., purified protein derivative antigen quality and manipulation, skin induration interpretation, and injection dose protocols) (15). In contrast, interferon-gamma release assays are expensive and cost-prohibitive for rural farmers. For detection and quantification of the disease, novel and low-cost biomarker-based tests are needed; they would enable proper identification and disposal of diseased animals to prevent new outbreaks of zoonotic TB. After bovine TB is diagnosed, whole-genome sequencing and MIRU-VNTR can differentiate M. bovis lineages and identify patterns of bovine TB transmission across Central America.
Our study provides the baseline genotypes and sequences of M. bovis strains involved in the 2013 outbreak of bovine TB in Panama. These data could serve as a reference to determine future sources of zoonotic M. bovis infection and help track the movement of M. bovis strains between Central American countries. Together these strategies will reinforce international bovine TB control and eradication efforts.
We thank Inversiones para el Desarrollo de Coclé S. A. for providing access to the cattle herd for this research and for providing the commercial diagnostic kits. We also thank Alfonso Nuñez, Romel Rosas, and. Leonidas Mendieta for their valuable support during diagnoses and postmortem evaluations. We appreciate the help of Colleen Goodridge in manuscript editing.
This study was partially funded by the Tuberculosis Biomarkers grant IDR10-067 from Secretaría Nacional de Ciencia Tecnología e Innovación, the fellowship program Secretaría Nacional de Ciencia Tecnología e Innovación –Ministerio de Economía y Finanzas–Chile, and the St. Petersburg State University grant no
Mr. Acosta is a visiting young scientist at the Tuberculosis Biomarker Research Unit of Instituto de Investigaciones Científicas y Servicios de Alta Tecnología, Ciudad del Saber, Panama. His research focuses on detection identification and genotyping of Mycobacterium spp. and the role of the interferon-gamma release assay in eradicating bovine TB.
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